Package: CTD 1.3

CTD: A Method for 'Connecting The Dots' in Weighted Graphs

A method for pattern discovery in weighted graphs as outlined in Thistlethwaite et al. (2021) <doi:10.1371/journal.pcbi.1008550>. Two use cases are achieved: 1) Given a weighted graph and a subset of its nodes, do the nodes show significant connectedness? 2) Given a weighted graph and two subsets of its nodes, are the subsets close neighbors or distant?

Authors:Varduhi Petrosyan [aut, cre], Lillian Thistlethwaite [aut]

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NEWS

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On CRAN:

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18 exports 4.55 score 11 dependencies 44 mentions 1 scripts 481 downloads

Last updated 1 months agofrom:8ced1dbae4. Checks:OK: 7. Indexed: yes.

Exports:data.combineDatadata.imputeDatadata.surrogateProfilesdata.zscoreDatagraph.connectToExtgraph.diffuseP1graph.diffusionSnapShotgraph.naivePruninggraph.netWalkSnapShotmle.getEncodingLengthmle.getMinPtDistancemle.getPtBSbyKmle.getPtDistmultiNode.getNodeRankssingleNode.getNodeRanksNstat.entropyFunctionstat.fishersMethodstat.getDirSim

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs